Workshop W4
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| Chair: | Dorret Boomsma, VU, Amsterdam The Netherlands | ||||
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GenomEutwin (www.genomeutwin.org)
is a collaboration of 8 large twin registries and the MORGAM population
cohort. This workshop discusses research objectives (develop strategies to
utilize the unique features of European population cohorts in the
characterization of complex traits; utilize the synergy between twin and
population cohorts in studies of genetic and life style risk predictors and
develop molecular and computational methods for genome-wide analyses of
population cohorts for specific traits (e.g stature, BMI, coronary heart
disease) and presents some first results from large twin based
epidemiological and linkage studies. Prof. Leena Peltonen, PI; Dr. Markus
Perola, Prof. Jaakko Kaprio, Dr. Kari Kuulasmaa, Prof. Aarno Palotie,
Finland |
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| Program |
1. Leena Peltonen: GenomEUtwin: Genome-wide analyses of European twin and
population cohorts to identify genes predisposing to common diseases |
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2. Markus Perola: Linkage results for Stature and BMI in European
populations |
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3. Gonneke Willemsen: Genetic analyses of cardiovascular risk factors in
European and Australian twins: Lipids, blood pressure and BMI. |
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4. Eco de Geus : Genetic variation in Exercise participation |
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| Abstracts | |||||
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Leena Peltonen: GenomEUtwin: Genome-wide analyses of European twin and
population cohorts to identify genes predisposing to common diseases
Twin cohorts provide a unique advantage for investigations of the role of
genetics and environment in the etiology of complex traits. Co-twins share
environment throughout critical fetal period and early years of life and
twin design harmonizes this component of complex traits in a unique manner.
The EU-funded GenomEUtwin consortium consists of 8 twin cohorts (Australian,
Danish, Dutch, Finnish, Italian, Norwegian, UK and Swedish) with > 600000
twin pairs. Federated database with open source code has been created to
share the data across the cohorts. This collaboration aims to create a
solution for problems that arise when analyzing human study samples with
inbuilt problems of poor epidemiological study design, ascertainment bias,
lack of longitudinal follow up of the phenotypes studied and a tremendous
amount of noise created by environmental variation throughout development,
but particularly during foetal life and childhood.
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Markus Perola: Linkage results for Stature and BMI in European
populations
Twin cohorts provide a unique advantage for investigations of the role of genetics and environment in the etiology of common traits. Co-twins share environment throughout critical fetal period and early years of life and twin design harmonizes this component of complex traits in a unique manner. The GenomEUtwin (www.genomeutwin.org) consortium consists of eight twin cohorts (Australian, Danish, Dutch, Finnish, Italian, Norwegian, UK and Swedish) with the total number of hundreds of thousands of twin pairs. We performed QTL analysis of stature (body height) using genome-wide scans performed for 7495 individuals with genome-wide microsatellite marker- and phenotype data: Australia (n=2609), Denmark (628), Finland (858), Netherlands (1086), Sweden (540) and United Kingdom (2212). The marker maps were combined and related to the sequence positions using computer program developed by us which uses DeCode genetic map markers as an anchoring set (www.bioinfo.helsinki.fi/cartographer). We used the program Merlin for variance components analysis with age, sex and country-of-origin as covariates. The covariate adjusted heritability was 90% for stature in the pooled data set. We found evidence for two major QTLs for human stature on 15q24 (LOD=3.75, 1-lod drop 11cm) and Xq25 (LOD=2.73, 15cM) and one for males only on chromosome 9. Especially the evidence for linkage for the X-chromosomal locus is contributed by most of the cohorts, thus suggesting an evolutionally old genetic variant having effect on the growth in European-based populations. The BMI of the cohorts is currently under analysis.
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Gonneke Willemsen: Genetic analyses of cardiovascular risk factors in
European and Australian twins: Lipids, blood pressure and BMI.
To understand the complex ways in which genes influence disease processes, such as cardiovascular disease development, we need large numbers of phenotyped and genotyped individuals. Such numbers can often only be obtained by collaboration of multiple research centres, sometimes even in different countries. The GenomEUtwin project entails a large-scale collaboration in eight countries with as one of its aims to understand the way genes influence cardiovascular disease risk. A first step in such an endeavour is to provide heritability estimates in the different countries for cardiovascular risk parameters, using the same method in each country. Such a procedure was used for body mass index (BMI) and blood pressure. Using the data of 37,000 complete twin pairs between ages 20-29 and 30-39 years we showed that heritability for BMI was mostly high (> 65%) and within the same range for the eight countries. Within one exception, there was no evidence for an influence of common environment on BMI. Data on opposite twins showed that there may be sex-specific genetic effects. Combining data of more than 4000 twins from seven countries we showed heritability for systolic blood pressure between 52% and 66% and for diastolic blood pressure between 44 and 66%. There was no evidence for an effect of common environment or sex-specific effects. These results lay the foundation for future gene hunting studies using linkage and association procedures.
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Eco J.C. de Geus: Genetic variation in exercise participation We recently assessed the relative contribution of genetic and environmental influences on variation in exercise participation across twin samples from seven countries participating in the GenomEUtwin project. In all countries, a significant contribution of genetic factors to exercise participation in leisure time was found. The median heritability of exercise participation was 62 percent across the 7 countries and ranged from 27 percent in Norwegian males to 70 percent in female twins from the UK. This study clearly showed that finding genes influencing exercise participation is very feasible and our progress along that path will be reported at the symposium. Identification of the chromosomal regions that harbor QTLs predisposing to exercise will allow us to increase the power of linkage enterprises for e.g. cardiovascular risk. These can then be done after stratifying for IBD status in these regions. Moreover, if linkage leads to the candidate “exercise genes” we can test whether individuals differ in their genetic sensitivity to the beneficial effects of exercise by exposing genotyped subjects to a standardized aerobic training program. We hypothesize that differential genetic sensitivity to the effects of exercise on mental and physical health explains the exercise patterns found in the population at large.
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